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For the supplied Ape object, run FIMO to identify putative transcription factor binding sites in a DNA subsequence.

Usage

Ape.fimo(ape, fimo_feature, out = NULL)

Arguments

ape

An Ape instance

fimo_feature

A character vector of features from the Ape object that will be used to run fimo.

out

Directory that will be created to hold the fimo results. A date/time stamp will be appended. If null, the objects will not be saved and the function will only return a GRanges object