Based on Monocle3's gene module functions. Implemented with default values. Will convert a Seurat object to a cell data set using SeuratWrappers and then calculate modules. The function returns an object of the same type.
Usage
bb_gene_modules(obj, n_cores = 8, cds = NULL)
Arguments
- obj
A single cell object of type Seurat or cell_data_set.
- n_cores
Number of processor cores to use for the analysis, Default: 8
- cds
Provided for backward compatibility. If a value is supplied, it will return a warning and transfer to the obj argument., Default: NULL
Value
An object of the same type: Seurat or cell_data_set
Details
see https://cole-trapnell-lab.github.io/monocle3/docs/differential/#gene-modules