Plot expression of a gene or genes in pseudotime.

Usage

bb_gene_pseudotime(
  cds_subset,
  min_expr = NULL,
  cell_size = 0.75,
  nrow = NULL,
  ncol = 1,
  panel_order = NULL,
  color_cells_by = "pseudotime",
  trend_formula = "~ splines::ns(pseudotime, df=3)",
  label_by_short_name = TRUE,
  vertical_jitter = NULL,
  horizontal_jitter = NULL
)

Arguments

cds_subset: A cell data set object subset with only cells and genes of interest
min_expr: Lower threshold of expression for plotting
cell_size: Size of point for plotting
nrow: Number of rows for facetting
ncol: Number of columns for facetting
panel_order: Character string for order of genes to plot
color_cells_by: A cds colData column
trend_formula: Formula for the trend line
label_by_short_name: Boolean to label by gene name or ID
vertical_jitter: Adjustment to vertical jitter. Optional
horizontal_jitter: Adjustment to horizontal jitter. Optional

Value

A ggplot