Import Peaks from SEACR

The function reads peaks in .bed file format produced by SEACR. Optionally add a group variable and value for later filtering or faceting when combined with other peak files.

The function reads peak files produced by MACS. Optionally add a group variable and value for later filtering or faceting when combined with other peak files.

Usage

bb_import_seacr_peaks(file, group_variable = NULL, group_value)

bb_import_macs_narrowpeaks(file, group_variable = NULL, group_value)

Arguments

file

file path to the MACS narrowpeak file

group_variable

An optional variable name for additional group metadata. PARAM_DESCRIPTION, Default: NULL

group_value

A value supplied to the group metadata variable. Required if group_variable is not NULL. PARAM_DESCRIPTION

Value

A GRanges object

A GRanges object

See also

read_delim select, mutate makeGRangesFromDataFrame

read_delim select, mutate makeGRangesFromDataFrame