Plot The Gene Model From A Trace Object — bb_plot_trace

A function to generate a plot of the underlying gene model. The genes to be plotted are automatically selected according to the genome build and the plot range. The function automatically picks the longest principle transcript to show. Optionally, alternative transcripts can be shown by specifying the select_transcript argument. This must be an ensembl transcript identifier lying within the plot range.

Usage

bb_plot_trace_model(
  trace,
  font_face = "italic",
  select_transcript = NULL,
  icon_fill = "cornsilk",
  debug = FALSE
)

Arguments

trace: A Trace object.
font_face: Font face option to use. Default = "italic".
select_transcript: Optional selected transcript(s) to plot.
icon_fill: The color to make the exon boxes.
debug: Boolean. Option to show the transcript ID on the final plot to confirm you have the right one. Default = FALSE.