Calculate The Overlap Between Peaks and Promoters — bb_promoter

For a given GRanges object containing peaks, determine how many peaks overlap promoters, how many promoters are overlapped by peaks and the significance of enrichment of query peaks relative to promoters.

Usage

bb_promoter_overlap(query, tss = c("hg38_tss", "dr11_tss"), width = 200)

Arguments

query: A GRanges object containing peaks
tss: The tss data base to use. Must be one of "hg38_tss" or "dr11_tss"
width: The width around the tss to evaluate. Defaults to 200 bp.

Value

A list including overlap information and binomal test results.