Take a cell_data_set or Seurat object and return the gene/feature metadata in the form of a tibble. RNA is used as the default assay.
Usage
bb_rowmeta(
obj,
row_name = "feature_id",
experiment_type = "Gene Expression",
assay = "RNA",
cds = NULL
)Arguments
- obj
A cell_data_set or Seurat object
- row_name
Optional name to provide for feature unique identifier, Default: 'feature_id'
- experiment_type
The experiment type to display. Applies only to cds objects. Commonly will be either "Gene Expression" or "Antibody Capture", Default: 'Gene Expression'
- assay
For a Seurat object, th feature assay to return. CDS objects with alternative experiments are not supported, Default: 'RNA'
- cds
Provided for compatibility with prior versions, Default: NULL